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This is the development version of HMP16SData; for the stable release version, see HMP16SData.

16S rRNA Sequencing Data from the Human Microbiome Project

Bioconductor version: Development (3.20)

HMP16SData is a Bioconductor ExperimentData package of the Human Microbiome Project (HMP) 16S rRNA sequencing data for variable regions 1–3 and 3–5. Raw data files are provided in the package as downloaded from the HMP Data Analysis and Coordination Center. Processed data is provided as SummarizedExperiment class objects via ExperimentHub.

Author: Lucas schiffer [aut, cre] , Rimsha Azhar [aut], Marcel Ramos [ctb], Ludwig Geistlinger [ctb], Levi Waldron [aut]

Maintainer: Lucas schiffer <schiffer.lucas at>

Citation (from within R, enter citation("HMP16SData")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

HMP16SData HTML R Script
Reference Manual PDF


biocViews ExperimentData, ExperimentHub, Homo_sapiens_Data, MicrobiomeData, ReproducibleResearch, SequencingData
Version 1.25.0
License Artistic-2.0
Depends R (>= 4.1.0), SummarizedExperiment
Imports AnnotationHub, ExperimentHub, S4Vectors, assertthat, dplyr, kableExtra, knitr, magrittr, methods, readr, stringr, tibble, utils
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Suggests Biobase, BiocCheck, BiocManager, BiocStyle, circlize, cowplot, dendextend, devtools, ggplot2, gridExtra, haven, phyloseq, rmarkdown, roxygen2, stats, testthat, tidyr
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Follow Installation instructions to use this package in your R session.

Source Package HMP16SData_1.25.0.tar.gz
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