FlowSorted.Blood.450k
This is the development version of FlowSorted.Blood.450k; for the stable release version, see FlowSorted.Blood.450k.
Illumina HumanMethylation Data on Sorted Blood Cell Populations
Bioconductor version: Development (3.24)
Provides functions to download (and cache locally via BiocFileCache) data objects for the Illumina 450k DNA methylation microarrays, and an object depicting which CpGs on the array are associated with cell type. The underlying data is hosted on Zenodo.
Author: Andrew E Jaffe [aut, cre]
Maintainer: Andrew E Jaffe <andrewejaffe at gmail.com>
citation("FlowSorted.Blood.450k")):Andrew E Jaffe. FlowSorted.Blood.450k: Illumina HumanMethylation Data on Sorted Blood Cell Populations. doi:10.18129/B9.bioc.FlowSorted.Blood.450k, R package version 1.51.2, https://bioconductor.org/packages/FlowSorted.Blood.450k.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("FlowSorted.Blood.450k") For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("FlowSorted.Blood.450k") | FlowSorted Blood 450k Guide | R Script | |
| Reference Manual |
Details
| biocViews | ExperimentData, Homo_sapiens_Data, MethylationArrayData, MicroarrayData, Tissue, TissueMicroarrayData |
| Version | 1.51.2 |
| In Bioconductor since | BioC 2.13 (R-3.0) (13 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.0.0), minfi (>= 1.21.2) |
| Imports | BiocFileCache, tools |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | methylationArrayAnalysis, methylCC |
| Imports Me | |
| Suggests Me | dnaEPICO, FlowSorted.Blood.EPIC, mCSEA, minfi, wateRmelon |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | FlowSorted.Blood.450k_1.51.2.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/FlowSorted.Blood.450k |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/FlowSorted.Blood.450k |
| Package Short Url | https://bioconductor.org/packages/FlowSorted.Blood.450k/ |
| Package Downloads Report | Download Stats |