ELMER.data

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of ELMER.data; for the stable release version, see ELMER.data.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2

Data for the ELMER package

Bioconductor version: Development (3.24)

Supporting data for the ELMER package. It includes: - elmer.data.example.promoter: mae.promoter - elmer.data.example: data - EPIC.hg38.manifest - EPIC.hg19.manifest - hm450.hg38.manifest - hm450.hg19.manifest - hocomoco.table - human.TF - LUSC_meth_refined: Meth - LUSC_RNA_refined: GeneExp - Probes.motif.hg19.450K - Probes.motif.hg19.EPIC - Probes.motif.hg38.450K - Probes.motif.hg38.EPIC - TF.family - TF.subfamily - Human_genes__GRCh37_p13 - Human_genes__GRCh38_p12 - Human_genes__GRCh37_p13__tss - Human_genes__GRCh38_p12__tss

Author: Tiago Chedraoui Silva, Lijing Yao Simon Coetzee, Benjamin P. Berman

Maintainer: Tiago Chedraoui Silva <tiagochst at gmail.com>

Citation (from within R, enter citation("ELMER.data")):

Tiago Chedraoui Silva, Lijing Yao Simon Coetzee, Benjamin P. Berman. ELMER.data: Data for the ELMER package. doi:10.18129/B9.bioc.ELMER.data, R package version 2.37.1, https://bioconductor.org/packages/ELMER.data.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("ELMER.data")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ELMER.data")

ELMER.data: Supporting data for the ELMER package	HTML	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	AssayDomainData, ExperimentData, OrganismData, TechnologyData
Version	2.37.1
In Bioconductor since	BioC 3.2 (R-3.2) (11 years)
License	GPL-3
Depends	R (>= 3.5.0)
Imports	GenomicRanges
System Requirements
URL

Suggests	BiocStyle, knitr, dplyr, devtools, DT, rmarkdown
Linking To
Enhances
Depends On Me	ELMER
Imports Me	EpiMix
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ELMER.data_2.37.1.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/ELMER.data
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ELMER.data
Package Short Url	https://bioconductor.org/packages/ELMER.data/
Package Downloads Report	Download Stats