• Home
• Bioconductor 3.24
• Experiment Packages
• EGSEAdata (development version)

EGSEAdata

This is the development version of EGSEAdata; for the stable release version, see EGSEAdata.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3

Gene set collections for the EGSEA package

DOI: 10.18129/B9.bioc.EGSEAdata

Bioconductor version: Development (3.24)

This package includes gene set collections that are used for the Ensemble of Gene Set Enrichment Analyses (EGSEA) method for gene set testing. It includes Human and Mouse versions of the MSidDB (Subramanian, et al. (2005) PNAS, 102(43):15545-15550) and GeneSetDB (Araki, et al. (2012) FEBS Open Bio, 2:76-82) collections.

Author: Monther Alhamdoosh, Yifang Hu and Gordon K. Smyth

Maintainer: Monther Alhamdoosh <m.hamdoosh at gmail.com>

Citation (from within R, enter citation("EGSEAdata")):

Monther Alhamdoosh, Yifang Hu and Gordon K. Smyth. EGSEAdata: Gene set collections for the EGSEA package. doi:10.18129/B9.bioc.EGSEAdata, R package version 1.41.0, https://bioconductor.org/packages/EGSEAdata.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("EGSEAdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Details

Package Archives

Follow Installation instructions to use this package in your R session.