CoSIAdata

This is the development version of CoSIAdata; for the stable release version, see CoSIAdata.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17

VST normalized RNA-Sequencing data with annotations for multiple species samples from Bgee

Bioconductor version: Development (3.24)

Variance Stabilized Transformation of Read Counts derived from Bgee RNA-Seq Expression Data. Expression Data includes annotations and is across 6 species (Homo sapiens, Mus musculus, Rattus norvegicus, Danio rerio, Drosophila melanogaster, and Caenorhabditis elegans) and across more than 132 tissues. The data is represented as a RData files and is available in ExperimentHub.

Author: Anisha Haldar [aut] ORCID: 0000-0002-1395-9793 , Vishal H. Oza [aut] ORCID: 0000-0001-6990-0267 , Amanda D. Clark [cre, aut] ORCID: 0000-0002-1186-3114 , Nathaniel S. DeVoss [aut] ORCID: 0000-0003-0465-2770 , Brittany N. Lasseigne [aut] ORCID: 0000-0002-1642-8904

Maintainer: Amanda D. Clark <clarkaduab at gmail.com>

Citation (from within R, enter citation("CoSIAdata")):

Anisha Haldar, Vishal H. Oza, Amanda D. Clark, Nathaniel S. DeVoss, Brittany N. Lasseigne. CoSIAdata: VST normalized RNA-Sequencing data with annotations for multiple species samples from Bgee. doi:10.18129/B9.bioc.CoSIAdata, R package version 1.13.0, https://bioconductor.org/packages/CoSIAdata.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("CoSIAdata")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CoSIAdata")

CoSIAdata	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Caenorhabditis_elegans_Data, Danio_rerio_Data, Drosophila_melanogaster_Data, ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, Mus_musculus_Data, OrganismData, PackageTypeData, RNASeqData, Rattus_norvegicus_Data, SequencingData, Tissue
Version	1.13.0
In Bioconductor since	BioC 3.17 (R-4.3) (3.5 years)
License	MIT + file LICENSE
Depends	R (>= 4.3.0), ExperimentHub (>= 2.6.0)
Imports
System Requirements
URL
Bug Reports	https://github.com/lasseignelab/CoSIAdata/issues

Suggests	BiocStyle (>= 2.26.0), utils (>= 4.3.0), AnnotationHub (>= 3.7.3), knitr (>= 1.42)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CoSIAdata_1.13.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/CoSIAdata
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CoSIAdata
Package Short Url	https://bioconductor.org/packages/CoSIAdata/
Package Downloads Report	Download Stats