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COHCAPanno

This is the development version of COHCAPanno; for the stable release version, see COHCAPanno.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14

Annotations for City of Hope CpG Island Analysis Pipeline


Bioconductor version: Development (3.24)

Provides genomic location, nearby CpG island and nearby gene information for common Illumina methylation array platforms

Author: Charles Warden

Maintainer: Charles Warden <cwarden45 at gmail.com>

Citation (from within R, enter citation("COHCAPanno")):

Charles Warden. COHCAPanno: Annotations for City of Hope CpG Island Analysis Pipeline. doi:10.18129/B9.bioc.COHCAPanno, R package version 1.49.0, https://bioconductor.org/packages/COHCAPanno.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("COHCAPanno")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("COHCAPanno")
COHCAPanno Vignette PDF R Script
Reference ManualPDF

Details

biocViews ArrayExpress, CpGIslandData, ExperimentData, GEO, Homo_sapiens_Data, MethylationArrayData, MicroarrayData
Version1.49.0
In Bioconductor sinceBioC 2.14 (R-3.1) (12.5 years)
License GPL-3
Depends R (>= 2.10)
Imports
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package COHCAPanno_1.49.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repositorygit clone https://git.bioconductor.org/packages/COHCAPanno
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/COHCAPanno
Package Short Url https://bioconductor.org/packages/COHCAPanno/
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