BioImageDbs

This is the development version of BioImageDbs; for the stable release version, see BioImageDbs.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13

Bio- and biomedical imaging dataset for machine learning and deep learning (for ExperimentHub)

Bioconductor version: Development (3.24)

The package provides a bioimage dataset for the image analysis using machine learning and deep learning. The dataset includes microscopy imaging data with supervised labels. The data is provided as R list data that can be loaded to Keras/tensorflow in R.

Author: Satoshi Kume [aut, cre] ORCID: 0000-0001-7481-2843 , Kozo Nishida [aut] ORCID: 0000-0001-8501-7319

Maintainer: Satoshi Kume <satoshi.kume.1984 at gmail.com>

Citation (from within R, enter citation("BioImageDbs")):

Satoshi Kume, Kozo Nishida. BioImageDbs: Bio- and biomedical imaging dataset for machine learning and deep learning (for ExperimentHub). doi:10.18129/B9.bioc.BioImageDbs, R package version 1.21.0, https://bioconductor.org/packages/BioImageDbs.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("BioImageDbs")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BioImageDbs")

The BioImageBbs Datasets	HTML	R Script
Providing Bioimage Dataset for ExperimentHub	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	CellCulture, ExperimentData, ExperimentHub, Tissue
Version	1.21.0
In Bioconductor since	BioC 3.13 (R-4.1) (5.5 years)
License	Artistic-2.0
Depends	R (>= 4.1.0)
Imports	ExperimentHub, AnnotationHub, markdown, rmarkdown, EBImage, magick, magrittr, filesstrings, animation, einsum
System Requirements
URL	https://kumes.github.io/BioImageDbs/

Suggests	knitr, BiocStyle, purrr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	BioImageDbs_1.21.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/BioImageDbs
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/BioImageDbs
Package Short Url	https://bioconductor.org/packages/BioImageDbs/
Package Downloads Report	Download Stats