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BeadSorted.Saliva.EPIC

This is the development version of BeadSorted.Saliva.EPIC; for the stable release version, see BeadSorted.Saliva.EPIC.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13

Illumina EPIC data on BeadSorted child saliva cells


Bioconductor version: Development (3.24)

Raw data objects used to estimate saliva cell proportion estimates in ewastools. The FlowSorted.Saliva.EPIC object is constructed from samples assayed by Lauren Middleton et. al. (2021).

Author: Jonah Fisher [aut, cre], Kelly Bakulski [aut], Lauren Middleton [aut]

Maintainer: Jonah Fisher <jazzfish at umich.edu>

Citation (from within R, enter citation("BeadSorted.Saliva.EPIC")):

Jonah Fisher, Kelly Bakulski, Lauren Middleton. BeadSorted.Saliva.EPIC: Illumina EPIC data on BeadSorted child saliva cells. doi:10.18129/B9.bioc.BeadSorted.Saliva.EPIC, R package version 1.21.0, https://bioconductor.org/packages/BeadSorted.Saliva.EPIC.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("BeadSorted.Saliva.EPIC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BeadSorted.Saliva.EPIC")
BeadSorted.Saliva.EPIC.html HTML R Script
Reference ManualPDF

Details

biocViews ExperimentData, ExperimentHub, Genome, Homo_sapiens_Data, MethylationArrayData, MicroarrayData
Version1.21.0
In Bioconductor sinceBioC 3.13 (R-4.1) (5.5 years)
License GPL-3
Depends R (>= 4.1), minfi (>= 1.36.0), ExperimentHub
Imports
System Requirements
URL
See More
Suggests knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me dnaEPICO
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BeadSorted.Saliva.EPIC_1.21.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repositorygit clone https://git.bioconductor.org/packages/BeadSorted.Saliva.EPIC
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/BeadSorted.Saliva.EPIC
Package Short Url https://bioconductor.org/packages/BeadSorted.Saliva.EPIC/
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