AssessORFData

This is the development version of AssessORFData; for the stable release version, see AssessORFData.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8

Data and Files for the AssessORF Package

Bioconductor version: Development (3.24)

This package provides access to mapping and results objects generated by the AssessORF package, as well as the genome sequences for the strains corresponding to those objects.

Author: Deepank Korandla [aut], Nicholas Cooley [cre] ORCID: 0000-0002-6029-304X

Maintainer: Nicholas Cooley <npc19 at pitt.edu>

Citation (from within R, enter citation("AssessORFData")):

Deepank Korandla. AssessORFData: Data and Files for the AssessORF Package. doi:10.18129/B9.bioc.AssessORFData, R package version 1.31.0, https://bioconductor.org/packages/AssessORFData.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("AssessORFData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AssessORFData")

Using AssessORFData	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Bacillus_subtilis_Data, Escherichia_coli_Data, ExperimentData, Genome, OrganismData, Proteome, Pseudomonas_aeruginosa_Data, SequencingData, Staphylococcus_aureus_Data
Version	1.31.0
In Bioconductor since	BioC 3.8 (R-3.5) (8 years)
License	GPL-3
Depends	R (>= 3.5.0), RSQLite (>= 1.1)
Imports	DECIPHER, utils
System Requirements
URL

Suggests	AssessORF, BiocStyle, knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	AssessORF
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	AssessORFData_1.31.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Source Repository	git clone https://git.bioconductor.org/packages/AssessORFData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/AssessORFData
Package Short Url	https://bioconductor.org/packages/AssessORFData/
Package Downloads Report	Download Stats