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phastCons100way.UCSC.hg19

This is the development version of phastCons100way.UCSC.hg19; for the stable release version, see phastCons100way.UCSC.hg19.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14

UCSC phastCons conservation scores for hg19


Bioconductor version: Development (3.24)

Store UCSC phastCons conservation scores for the human genome (hg19) calculated from multiple alignments with other 99 vertebrate species.

Author: Robert Castelo [aut, cre]

Maintainer: Robert Castelo <robert.castelo at upf.edu>

Citation (from within R, enter citation("phastCons100way.UCSC.hg19")):

Robert Castelo. phastCons100way.UCSC.hg19: UCSC phastCons conservation scores for hg19. doi:10.18129/B9.bioc.phastCons100way.UCSC.hg19, R package version 3.7.2, https://bioconductor.org/packages/phastCons100way.UCSC.hg19.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("phastCons100way.UCSC.hg19")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference ManualPDF
NEWSText

Details

biocViews AnnotationData, Genetics, GenomicScores, Homo_sapiens
Version3.7.2
In Bioconductor sinceBioC 2.14 (R-3.1) (12.5 years)
License Artistic-2.0
Depends R (>= 3.0.0), GenomicScores (>= 1.3.19)
Imports utils, S4Vectors, IRanges, GenomicRanges, GenomeInfoDb, BSgenome
System Requirements
URL
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Suggests
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Enhances
Depends On Me
Imports Me RareVariantVis
Suggests Me ATACseqQC, VariantFiltering
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package phastCons100way.UCSC.hg19_3.7.2.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Package Short Url https://bioconductor.org/packages/phastCons100way.UCSC.hg19/
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