methylTFRAnnotationHg38
This is the development version of methylTFRAnnotationHg38; to use it, please install the devel version of Bioconductor.
methylTFR Annotations for hg38
Bioconductor version: Development (3.24)
Precomputed transcription factor binding sites, motif GC frequency tables and a genome-wide GC distribution for use with the methylTFR package. Binding sites are genome-wide motif matches extended to the footprint window methylTFR reads across; the GC tables record how each motif's sites distribute over genome-wide GC quintiles, which is what allows a deviation score to be corrected for sequence composition. The data are hosted on AnnotationHub and retrieved on first use; this package provides the accessors and the documentation.
Author: Irem B. Gündüz [aut, cre] 
, Fabian Mueller [aut] , ERA-NET Transcan-Neu III - EPILUNAR [fnd] (Grant 01KT2409), Saarland University [fnd] (NanoBioMed Young Investigator Grant)
Maintainer: Irem B. Gündüz <irembgunduz at gmail.com>
citation("methylTFRAnnotationHg38")):Irem B. Gündüz, Fabian Mueller. methylTFRAnnotationHg38: methylTFR Annotations for hg38. doi:10.18129/B9.bioc.methylTFRAnnotationHg38, R package version 0.99.12, https://bioconductor.org/packages/methylTFRAnnotationHg38.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("methylTFRAnnotationHg38")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("methylTFRAnnotationHg38")| methylTFRAnnotationHg38 | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | AnnotationData, AnnotationHub, FunctionalAnnotation, Homo_sapiens, SequenceAnnotation |
| Version | 0.99.12 |
| In Bioconductor since | BioC 3.24 (R-4.6) |
| License | Artistic-2.0 |
| Depends | R (>= 4.6.0) |
| Imports | AnnotationHub, GenomicRanges, stats |
| System Requirements | |
| URL | https://github.com/EpigenomeInformatics/methylTFRAnnotationHg38 |
| Bug Reports | https://github.com/EpigenomeInformatics/methylTFRAnnotationHg38/issues |
See More
| Suggests | knitr, rmarkdown, testthat (>= 3.0.0), BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | methylTFRAnnotationHg38_0.99.12.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Package Short Url | https://bioconductor.org/packages/methylTFRAnnotationHg38/ |
| Package Downloads Report | Download Stats |