TxDb.Mmusculus.UCSC.mm10.knownGene
This is the development version of TxDb.Mmusculus.UCSC.mm10.knownGene; for the stable release version, see TxDb.Mmusculus.UCSC.mm10.knownGene.
Annotation package for TxDb object(s)
Bioconductor version: Development (3.24)
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
Author: Bioconductor Core Team, Bioconductor Package Maintainer <maintainer at bioconductor.org> [cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("TxDb.Mmusculus.UCSC.mm10.knownGene")):Bioconductor Core Team, Bioconductor Package Maintainer. TxDb.Mmusculus.UCSC.mm10.knownGene: Annotation package for TxDb object(s). doi:10.18129/B9.bioc.TxDb.Mmusculus.UCSC.mm10.knownGene, R package version 3.10.0, https://bioconductor.org/packages/TxDb.Mmusculus.UCSC.mm10.knownGene.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("TxDb.Mmusculus.UCSC.mm10.knownGene") For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| No vignettes available | |
| Reference Manual |
Details
| biocViews | AnnotationData, Genetics, Mus_musculus, TxDb |
| Version | 3.10.0 |
| In Bioconductor since | BioC 2.11 (R-2.15) (14 years) |
| License | Artistic-2.0 |
| Depends | GenomicFeatures (>= 1.37.4) |
| Imports | AnnotationDbi |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | Mus.musculus |
| Imports Me | ChIPQC, crupR, fourSynergy, gINTomics, profileplyr, sigvar |
| Suggests Me | annotatr, BSgenome, chipenrich.data, chipseqDB, cinaR, CRISPRseek, csaw, DegCre, enhancerHomologSearch, EpiCompare, epiRomics, epivizrData, GenomicFeatures, GenomicRanges, GRaNIE, InPAS, karyoploteR, monaLisa, multicrispr, NanoMethViz, NoRCE, tidyCoverage |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TxDb.Mmusculus.UCSC.mm10.knownGene_3.10.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Package Short Url | https://bioconductor.org/packages/TxDb.Mmusculus.UCSC.mm10.knownGene/ |
| Package Downloads Report | Download Stats |