Registration and Call for Abstracts Open for Bioc2024

SomaScan.db

This is the development version of SomaScan.db; for the stable release version, see SomaScan.db.

Somalogic SomaScan Annotation Data


Bioconductor version: Development (3.19)

An R package providing extended biological annotations for the SomaScan Assay, a proteomics platform developed by SomaLogic Operating Co., Inc. The annotations in this package were assembled using data from public repositories. For more information about the SomaScan assay and its data, please reference the 'SomaLogic/SomaLogic-Data' GitHub repository.

Author: Amanda Hiser [cre, aut] , SomaLogic Operating Co., Inc. [cph, fnd]

Maintainer: Amanda Hiser <ahiser at somalogic.com>

Citation (from within R, enter citation("SomaScan.db")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("SomaScan.db")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SomaScan.db")
Advanced Exploration of the SomaScan Menu HTML R Script
Example ADAT Workflow Using SomaScan.db HTML R Script
Introduction to SomaScan.db HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews AnnotationData, ChipDb, Homo_sapiens
Version 0.99.8
License MIT + file LICENSE
Depends R (>= 4.3.0), AnnotationDbi(>= 1.56.2), methods
Imports DBI, org.Hs.eg.db(>= 3.14.0)
System Requirements
URL https://somalogic.com https://github.com/SomaLogic/SomaScan.db/
Bug Reports https://github.com/SomaLogic/SomaScan.db/issues
See More
Suggests annotate, BiocStyle, dplyr, GO.db, hgu95av2.db, KEGGREST, knitr, rmarkdown, SomaDataIO, testthat (>= 3.0.0), tibble, withr
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SomaScan.db_0.99.8.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url https://bioconductor.org/packages/SomaScan.db/
Package Downloads Report Download Stats