SNPlocs.Hsapiens.dbSNP150.GRCh38
This is the development version of SNPlocs.Hsapiens.dbSNP150.GRCh38; for the stable release version, see SNPlocs.Hsapiens.dbSNP150.GRCh38.
SNP locations for Homo sapiens (dbSNP Build 150)
Bioconductor version: Development (3.20)
SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 150. The source data files used for this package were created by NCBI between March 12-14, 2017, and contain SNPs mapped to reference genome GRCh38.p7 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). Note that these SNPs can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or in BSgenome.Hsapiens.UCSC.hg38.
Author: Hervé Pagès
Maintainer: H. Pagès <hpages at fredhutch.org>
citation("SNPlocs.Hsapiens.dbSNP150.GRCh38")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("SNPlocs.Hsapiens.dbSNP150.GRCh38")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
Reference Manual |
Details
biocViews | AnnotationData, Genetics, Homo_sapiens, SNPlocs |
Version | 0.99.20 |
License | Artistic-2.0 |
Depends | BSgenome(>= 1.43.4) |
Imports | methods, utils, BiocGenerics, S4Vectors, IRanges, GenomeInfoDb, GenomicRanges, BSgenome |
System Requirements | |
URL |
See More
Suggests | Biostrings, BSgenome.Hsapiens.UCSC.hg38 |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | SNPlocs.Hsapiens.dbSNP150.GRCh38_0.99.20.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Package Short Url | https://bioconductor.org/packages/SNPlocs.Hsapiens.dbSNP150.GRCh38/ |
Package Downloads Report | Download Stats |