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FDb.FANTOM4.promoters.hg19

This is the development version of FDb.FANTOM4.promoters.hg19; for the stable release version, see FDb.FANTOM4.promoters.hg19.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11

Annotation package for FANTOM4 promoters identified from THP-1 cells


Bioconductor version: Development (3.24)

FANTOM4 promoters, liftOver'ed from hg18 to hg19, CpGs quantified

Author: Tim Triche, Jr.

Maintainer: Tim Triche, Jr. <tim.triche at gmail.com>

Citation (from within R, enter citation("FDb.FANTOM4.promoters.hg19")):

Tim Triche, Jr. FDb.FANTOM4.promoters.hg19: Annotation package for FANTOM4 promoters identified from THP-1 cells. doi:10.18129/B9.bioc.FDb.FANTOM4.promoters.hg19, R package version 1.0.0, https://bioconductor.org/packages/FDb.FANTOM4.promoters.hg19.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("FDb.FANTOM4.promoters.hg19")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference ManualPDF

Details

biocViews AnnotationData, Homo_sapiens
Version1.0.0
In Bioconductor sinceBioC 2.11 (R-2.15) (14 years)
License Artistic-2.0
Depends GenomicFeatures (>= 1.7.22), Biostrings
Imports GenomicFeatures, AnnotationDbi
System Requirements
URL
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Suggests BSgenome.Hsapiens.UCSC.hg19, rtracklayer, matrixStats
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Depends On Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package FDb.FANTOM4.promoters.hg19_1.0.0.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64)
macOS Binary (sonoma-arm64)
Package Short Url https://bioconductor.org/packages/FDb.FANTOM4.promoters.hg19/
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