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This is the development version of BSgenome.Ptroglodytes.UCSC.panTro3.masked; for the stable release version, see BSgenome.Ptroglodytes.UCSC.panTro3.masked.

Full masked genome sequences for Pan troglodytes (UCSC version panTro3)

Bioconductor version: Development (3.20)

Full genome sequences for Pan troglodytes (Chimp) as provided by UCSC (panTro3, Oct. 2010) and stored in Biostrings objects. The sequences are the same as in BSgenome.Ptroglodytes.UCSC.panTro3, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at>

Citation (from within R, enter citation("BSgenome.Ptroglodytes.UCSC.panTro3.masked")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


Reference Manual PDF


biocViews AnnotationData, BSgenome, Genetics, Pan_troglodytes
Version 1.3.99
License Artistic-2.0
Depends BSgenome(>= 1.31.8), BSgenome.Ptroglodytes.UCSC.panTro3
Imports BSgenome, BSgenome.Ptroglodytes.UCSC.panTro3
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Follow Installation instructions to use this package in your R session.

Source Package BSgenome.Ptroglodytes.UCSC.panTro3.masked_1.3.99.tar.gz
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