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BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0

This is the development version of BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0; for the stable release version, see BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0.

T2T-CHM13v2.0 assembly (Homo sapiens) wrapped in a BSgenome object


Bioconductor version: Development (3.20)

The T2T-CHM13v2.0 assembly (accession GCA_009914755.4), as submitted to NCBI by the T2T Consortium, and wrapped in a BSgenome object. Companion paper: "The complete sequence of a human genome" by Nurk S, Koren S, Rhie A, Rautiainen M, et al. Science, 2022.

Author: The Bioconductor Dev Team

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews AnnotationData, BSgenome, Genetics, Homo_sapiens
Version 1.5.0
License Artistic-2.0
Depends R (>= 3.5.0), BSgenome(>= 1.62.0)
Imports BSgenome
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0_1.5.0.tar.gz
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Package Short Url https://bioconductor.org/packages/BSgenome.Hsapiens.NCBI.T2T.CHM13v2.0/
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