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xmapbridge

This is the development version of xmapbridge; for the stable release version, see xmapbridge.

Export plotting files to the xmapBridge for visualisation in X:Map


Bioconductor version: Development (3.19)

xmapBridge can plot graphs in the X:Map genome browser. This package exports plotting files in a suitable format.

Author: Tim Yates <Tim.Yates at cruk.manchester.ac.uk> and Crispin J Miller <Crispin.Miller at cruk.manchester.ac.uk>

Maintainer: Chris Wirth <Christopher.Wirth at cruk.manchester.ac.uk>

Citation (from within R, enter citation("xmapbridge")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("xmapbridge")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("xmapbridge")
xmapbridge primer PDF R Script
Reference Manual PDF

Details

biocViews Annotation, ReportWriting, Software, Visualization
Version 1.61.0
In Bioconductor since BioC 2.3 (R-2.8) (15.5 years)
License LGPL-3
Depends R (>= 2.0), methods
Imports
System Requirements
URL http://xmap.picr.man.ac.uk http://www.bioconductor.org
See More
Suggests RUnit, RColorBrewer
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package xmapbridge_1.61.0.tar.gz
Windows Binary xmapbridge_1.61.0.zip
macOS Binary (x86_64) xmapbridge_1.61.0.tgz
macOS Binary (arm64) xmapbridge_1.61.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/xmapbridge
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/xmapbridge
Bioc Package Browser https://code.bioconductor.org/browse/xmapbridge/
Package Short Url https://bioconductor.org/packages/xmapbridge/
Package Downloads Report Download Stats