vtpnet

This is the development version of vtpnet; for the stable release version, see vtpnet.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13

variant-transcription factor-phenotype networks

Bioconductor version: Development (3.24)

variant-transcription factor-phenotype networks, inspired by Maurano et al., Science (2012), PMID 22955828

Author: VJ Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("vtpnet")):

VJ Carey. vtpnet: variant-transcription factor-phenotype networks. doi:10.18129/B9.bioc.vtpnet, R package version 0.53.0, https://bioconductor.org/packages/vtpnet.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("vtpnet")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("vtpnet")

vtpnet: variant-transcription factor-network tools	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Network, Software
Version	0.53.0
In Bioconductor since	BioC 2.13 (R-3.0) (13 years)
License	Artistic-2.0
Depends	R (>= 3.0.0), graph, GenomicRanges, gwascat, doParallel, foreach
Imports
System Requirements
URL

Suggests	MotifDb, VariantAnnotation, Rgraphviz
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	vtpnet_0.53.0.tar.gz
Windows Binary (x86_64)	vtpnet_0.53.0.zip (64-bit only)
macOS Binary (big-sur-x86_64)	vtpnet_0.53.0.tgz
macOS Binary (sonoma-arm64)	vtpnet_0.53.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/vtpnet
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/vtpnet
Package Short Url	https://bioconductor.org/packages/vtpnet/
Package Downloads Report	Download Stats