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uSORT

This is the development version of uSORT; for the stable release version, see uSORT.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4

uSORT: A self-refining ordering pipeline for gene selection

DOI: 10.18129/B9.bioc.uSORT

Bioconductor version: Development (3.24)

This package is designed to uncover the intrinsic cell progression path from single-cell RNA-seq data. It incorporates data pre-processing, preliminary PCA gene selection, preliminary cell ordering, feature selection, refined cell ordering, and post-analysis interpretation and visualization.

Author: Mai Chan Lau, Hao Chen, Jinmiao Chen

Maintainer: Hao Chen <chen_hao at immunol.a-star.edu.sg>

Citation (from within R, enter citation("uSORT")):

Mai Chan Lau, Hao Chen, Jinmiao Chen. uSORT: uSORT: A self-refining ordering pipeline for gene selection. doi:10.18129/B9.bioc.uSORT, R package version 1.39.0, https://bioconductor.org/packages/uSORT.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("uSORT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("uSORT")

Details

Package Archives

Follow Installation instructions to use this package in your R session.