To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("treeio")

In most cases, you don't need to download the package archive at all.

treeio

 

   

This is the development version of treeio; to use it, please install the devel version of Bioconductor.

Base Classes and Functions for Phylogenetic Tree Input and Output

Bioconductor version: Development (3.5)

Base classes and functions for parsing and exporting phylogenetic trees.

Author: Guangchuang Yu [aut, cre], Tommy Tsan-Yuk Lam [aut, ths], Casey Dunn [ctb], Bradley Jones [ctb]

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("treeio")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("treeio")

Documentation

HTML R Script Tree Data Input and Output
PDF   Reference Manual
Text   NEWS

Details

biocViews Alignment, Annotation, Clustering, DataImport, MultipleSequenceAlignment, Software
Version 0.99.10
In Bioconductor since BioC 3.5 (R-3.4)
License Artistic-2.0
Depends R (>= 3.3.2)
Imports ape, ggplot2, jsonlite, magrittr, methods
LinkingTo
Suggests Biostrings, ggtree(>= 1.7.5), knitr, prettydoc, testthat
SystemRequirements
Enhances
URL https://guangchuangyu.github.io/treeio
BugReports https://github.com/GuangchuangYu/treeio/issues
Depends On Me ggtree
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source treeio_0.99.10.tar.gz
Windows Binary treeio_0.99.10.zip
Mac OS X 10.9 (Mavericks) treeio_0.99.10.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/treeio
Package Short Url http://bioconductor.org/packages/treeio/
Package Downloads Report Download Stats

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