tRNAscanImport
This is the development version of tRNAscanImport; for the stable release version, see tRNAscanImport.
Importing a tRNAscan-SE result file as GRanges object
Bioconductor version: Development (3.20)
The package imports the result of tRNAscan-SE as a GRanges object.
Author: Felix G.M. Ernst [aut, cre]
Maintainer: Felix G.M. Ernst <felix.gm.ernst at outlook.com>
Citation (from within R, enter
citation("tRNAscanImport")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("tRNAscanImport")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("tRNAscanImport")
tRNAscanImport | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | DataImport, Preprocessing, Software, Visualization, WorkflowStep |
Version | 1.25.0 |
In Bioconductor since | BioC 3.7 (R-3.5) (6.5 years) |
License | GPL-3 + file LICENSE |
Depends | R (>= 3.5), GenomicRanges, tRNA |
Imports | methods, stringr, BiocGenerics, Biostrings, Structstrings, S4Vectors, IRanges, XVector, GenomeInfoDb, rtracklayer, BSgenome, Rsamtools |
System Requirements | |
URL | https://github.com/FelixErnst/tRNAscanImport |
Bug Reports | https://github.com/FelixErnst/tRNAscanImport/issues |
See More
Suggests | BiocStyle, knitr, rmarkdown, testthat, ggplot2, BSgenome.Scerevisiae.UCSC.sacCer3 |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | Structstrings, tRNA |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | tRNAscanImport_1.25.0.tar.gz |
Windows Binary | tRNAscanImport_1.25.0.zip |
macOS Binary (x86_64) | tRNAscanImport_1.25.0.tgz |
macOS Binary (arm64) | tRNAscanImport_1.25.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/tRNAscanImport |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/tRNAscanImport |
Bioc Package Browser | https://code.bioconductor.org/browse/tRNAscanImport/ |
Package Short Url | https://bioconductor.org/packages/tRNAscanImport/ |
Package Downloads Report | Download Stats |