tRNAdbImport

This is the development version of tRNAdbImport; for the stable release version, see tRNAdbImport.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8

Importing from tRNAdb and mitotRNAdb as GRanges objects

Bioconductor version: Development (3.24)

tRNAdbImport imports the entries of the tRNAdb and mtRNAdb (http://trna.bioinf.uni-leipzig.de) as GRanges object.

Author: Felix G.M. Ernst [aut, cre] ORCID: 0000-0001-5064-0928

Maintainer: Felix G.M. Ernst <felix.gm.ernst at outlook.com>

Citation (from within R, enter citation("tRNAdbImport")):

Felix G.M. Ernst. tRNAdbImport: Importing from tRNAdb and mitotRNAdb as GRanges objects. doi:10.18129/B9.bioc.tRNAdbImport, R package version 1.31.0, https://bioconductor.org/packages/tRNAdbImport.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("tRNAdbImport")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("tRNAdbImport")

tRNAdbImport	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DataImport, Software, Visualization
Version	1.31.0
In Bioconductor since	BioC 3.8 (R-3.5) (8 years)
License	GPL-3 + file LICENSE
Depends	R (>= 3.6), GenomicRanges, Modstrings, Structstrings, tRNA
Imports	Biostrings, stringr, httr2, xml2, S4Vectors, methods, IRanges, utils
System Requirements
URL
Bug Reports	https://github.com/FelixErnst/tRNAdbImport/issues

Suggests	BiocGenerics, knitr, rmarkdown, testthat, httptest, BiocStyle, rtracklayer
Linking To
Enhances
Depends On Me
Imports Me	EpiTxDb
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	tRNAdbImport_1.31.0.tar.gz
Windows Binary (x86_64)	tRNAdbImport_1.31.0.zip
macOS Binary (big-sur-x86_64)	tRNAdbImport_1.31.0.tgz
macOS Binary (sonoma-arm64)	tRNAdbImport_1.31.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/tRNAdbImport
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/tRNAdbImport
Package Short Url	https://bioconductor.org/packages/tRNAdbImport/
Package Downloads Report	Download Stats