splicelogic
splicelogic: differential transcripts to splice events
Bioconductor version: 3.24 · Package version: 1.1.4
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Translate differential transcript usage results into discrete splice events.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("splicelogic")Details
| Maintainer | Beatriz Campillo <beatrizcampillo29@gmail.com> |
| Author | Beatriz Campillo [aut, cre] (ORCID: <https://orcid.org/0000-0001-7323-9125>), Michael Love [aut] (ORCID: <https://orcid.org/0000-0001-8401-0545>), NIH NHGRI [fnd], Wellcome Trust [fnd] |
| License | MIT + file LICENSE |
| URL | https://github.com/thelovelab/splicelogic, https://thelovelab.github.io/splicelogic |
| Bug Reports | https://github.com/thelovelab/splicelogic/issues |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | AlternativeSplicing, Annotation, DifferentialSplicing, FunctionalGenomics, LongRead, RNASeq, Software, Transcriptomics |
| Package Short Url | https://bioconductor.org/packages/splicelogic/ |
Citation
From within R, enter citation("splicelogic"):
Beatriz Campillo, Michael Love. splicelogic: splicelogic: differential transcripts to splice events. doi:10.18129/B9.bioc.splicelogic, R package version 1.1.4, https://bioconductor.org/packages/splicelogic.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | splicelogic_1.1.4.tar.gz |
| Windows binary (x86_64) | splicelogic_1.1.4.zip |
| macOS binary (arm64) | splicelogic_1.1.4.tgz |
| macOS binary (x86_64) | splicelogic_1.1.4.tgz |
Dependencies
Depends: R (>= 4.5.0)
Imports: dplyr, magrittr, GenomicRanges, plyranges, tibble, IRanges, S4Vectors, rlang, methods, stats
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), readr, wiggleplotr, GenomicFeatures, AnnotationHub, ggplot2, AnnotationDbi, Seqinfo, BSgenome, Biostrings, BSgenome.Hsapiens.UCSC.hg38