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smartid

This is the development version of smartid; for the stable release version, see smartid.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19

Scoring and Marker Selection Method Based on Modified TF-IDF

DOI: 10.18129/B9.bioc.smartid

Bioconductor version: Development (3.24)

This package enables automated selection of group specific signature, especially for rare population. The package is developed for generating specifc lists of signature genes based on Term Frequency-Inverse Document Frequency (TF-IDF) modified methods. It can also be used as a new gene-set scoring method or data transformation method. Multiple visualization functions are implemented in this package.

Author: Jinjin Chen [aut, cre] ORCID: 0000-0001-7923-5723

Maintainer: Jinjin Chen <chen.j at wehi.edu.au>

Citation (from within R, enter citation("smartid")):

Jinjin Chen. smartid: Scoring and Marker Selection Method Based on Modified TF-IDF. doi:10.18129/B9.bioc.smartid, R package version 1.9.2, https://bioconductor.org/packages/smartid.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("smartid")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("smartid")

Details

Package Archives

Follow Installation instructions to use this package in your R session.