seqcombo

This is the development version of seqcombo; for the stable release version, see seqcombo.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6

Visualization Tool for Genetic Reassortment

Bioconductor version: Development (3.24)

Provides useful functions for visualizing virus reassortment events.

Author: Guangchuang Yu [aut, cre]

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("seqcombo")):

Guangchuang Yu. seqcombo: Visualization Tool for Genetic Reassortment. doi:10.18129/B9.bioc.seqcombo, R package version 1.35.0, https://bioconductor.org/packages/seqcombo.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("seqcombo")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("seqcombo")

Reassortment	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Alignment, Software, Visualization
Version	1.35.0
In Bioconductor since	BioC 3.6 (R-3.4) (9 years)
License	Artistic-2.0
Depends	R (>= 3.4.0)
Imports	ggplot2, grid, igraph, utils, yulab.utils
System Requirements
URL
Bug Reports	https://github.com/GuangchuangYu/seqcombo/issues

Suggests	emojifont, knitr, rmarkdown, prettydoc, tibble
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	seqcombo_1.35.0.tar.gz
Windows Binary (x86_64)	seqcombo_1.35.0.zip
macOS Binary (big-sur-x86_64)	seqcombo_1.35.0.tgz
macOS Binary (sonoma-arm64)	seqcombo_1.35.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/seqcombo
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/seqcombo
Package Short Url	https://bioconductor.org/packages/seqcombo/
Package Downloads Report	Download Stats