sechm
This is the development version of sechm; for the stable release version, see sechm.
All Bioconductor versions of sechm
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13
sechm: Complex Heatmaps from a SummarizedExperiment
Bioconductor version: 3.24 · Package version: 1.21.0
sechm provides a simple interface between SummarizedExperiment objects and the ComplexHeatmap package. It enables plotting annotated heatmaps from SE objects, with easy access to rowData and colData columns, and implements a number of features to make the generation of heatmaps easier and more flexible. These functionalities used to be part of the SEtools package.
Author: Pierre-Luc Germain [cre, aut] 
Maintainer: Pierre-Luc Germain <pierre-luc.germain at hest.ethz.ch>
Citation
From within R, enter citation("sechm"):
Pierre-Luc Germain. sechm: sechm: Complex Heatmaps from a SummarizedExperiment. doi:10.18129/B9.bioc.sechm, R package version 1.21.0, https://bioconductor.org/packages/sechm.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("sechm")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.21.0 |
| License | GPL-3 |
| Bug Reports | https://github.com/plger/sechm |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.13 (R-4.1) (5 years) |
| Downloads rank | 1257 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | GeneExpression, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/sechm/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("sechm")| sechm | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | sechm_1.21.0.tar.gz |
| Windows binary (x86_64) | sechm_1.21.0.zip |
| macOS binary (arm64) | sechm_1.21.0.tgz |
| macOS binary (x86_64) | sechm_1.21.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/sechm |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/sechm |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 4.0), SummarizedExperiment, ComplexHeatmap
Imports: S4Vectors, seriation, circlize, methods, randomcoloR, stats, grid, grDevices, matrixStats