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screenCounter

This is the development version of screenCounter; for the stable release version, see screenCounter.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17

Counting Reads in High-Throughput Sequencing Screens

DOI: 10.18129/B9.bioc.screenCounter

Bioconductor version: Development (3.24)

Provides functions for counting reads from high-throughput sequencing screen data (e.g., CRISPR, shRNA) to quantify barcode abundance. Currently supports single barcodes in single- or paired-end data, and combinatorial barcodes in paired-end data.

Author: Aaron Lun [aut, cre] ORCID: 0000-0002-3564-4813

Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>

Citation (from within R, enter citation("screenCounter")):

Aaron Lun. screenCounter: Counting Reads in High-Throughput Sequencing Screens. doi:10.18129/B9.bioc.screenCounter, R package version 1.13.0, https://bioconductor.org/packages/screenCounter.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("screenCounter")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("screenCounter")

Details

Package Archives

Follow Installation instructions to use this package in your R session.