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This is the development version of rsemmed; for the stable release version, see rsemmed.

An interface to the Semantic MEDLINE database

Bioconductor version: Development (3.19)

A programmatic interface to the Semantic MEDLINE database. It provides functions for searching the database for concepts and finding paths between concepts. Path searching can also be tailored to user specifications, such as placing restrictions on concept types and the type of link between concepts. It also provides functions for summarizing and visualizing those paths.

Author: Leslie Myint [aut, cre]

Maintainer: Leslie Myint <leslie.myint at gmail.com>

Citation (from within R, enter citation("rsemmed")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

rsemmed User's Guide HTML R Script
Reference Manual PDF


biocViews Annotation, Pathways, Software, SystemsBiology
Version 1.13.0
In Bioconductor since BioC 3.12 (R-4.0) (3.5 years)
License Artistic-2.0
Depends R (>= 4.0), igraph
Imports methods, magrittr, stringr, dplyr
System Requirements
URL https://github.com/lmyint/rsemmed
Bug Reports https://github.com/lmyint/rsemmed/issues
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Suggests testthat, knitr, BiocStyle, rmarkdown
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rsemmed_1.13.0.tar.gz
Windows Binary rsemmed_1.13.0.zip
macOS Binary (x86_64) rsemmed_1.13.0.tgz
macOS Binary (arm64) rsemmed_1.13.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rsemmed
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rsemmed
Bioc Package Browser https://code.bioconductor.org/browse/rsemmed/
Package Short Url https://bioconductor.org/packages/rsemmed/
Package Downloads Report Download Stats