rsbml
This is the development version of rsbml; for the stable release version, see rsbml.
All Bioconductor versions of rsbml
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5
R support for SBML, using libsbml
Bioconductor version: 3.24 · Package version: 2.71.1
Links R to libsbml for SBML parsing, validating output, provides an S4 SBML DOM, converts SBML to R graph objects. Optionally links to the SBML ODE Solver Library (SOSLib) for simulating models.
Author: Michael Lawrence <michafla at gene.com>
Maintainer: Michael Lawrence <michafla at gene.com>
Citation
From within R, enter citation("rsbml"):
Michael Lawrence. rsbml: R support for SBML, using libsbml. doi:10.18129/B9.bioc.rsbml, R package version 2.71.1, https://bioconductor.org/packages/rsbml.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("rsbml")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 2.71.1 |
| License | Artistic-2.0 |
| URL | http://www.sbml.org |
| System Requirements | libsbml (==5.10.2) |
| Last updated | 2026-05-29 |
| In Bioconductor since | BioC 2.5 or earlier (R-2.10) (16 years) |
| Downloads rank | 1514 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | GraphAndNetwork, Network, Pathways, Software |
| Package Short Url | https://bioconductor.org/packages/rsbml/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rsbml")| Quick start for rsbml | R Script | |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | rsbml_2.71.1.tar.gz |
| Source Repository | git clone https://git.bioconductor.org/packages/rsbml |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/rsbml |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 2.6.0), BiocGenerics (>= 0.3.2), methods, utils
Imports: BiocGenerics, graph, utils