rpx

DOI: 10.18129/B9.bioc.rpx    

This is the development version of rpx; to use it, please install the devel version of Bioconductor.

R Interface to the ProteomeXchange Repository

Bioconductor version: Development (3.10)

The rpx package implements an interface to proteomics data submitted to the ProteomeXchange consortium.

Author: Laurent Gatto

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("rpx")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("rpx")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rpx")

 

HTML R Script An R interface to the ProteomeXchange repository
PDF   Reference Manual

Details

biocViews DataImport, ImmunoOncology, MassSpectrometry, Proteomics, Software, ThirdPartyClient
Version 1.21.0
In Bioconductor since BioC 2.14 (R-3.1) (5 years)
License GPL-2
Depends methods
Imports xml2, RCurl, utils
LinkingTo
Suggests MSnbase, Biostrings, BiocStyle, testthat, knitr
SystemRequirements
Enhances
URL https://github.com/lgatto/rpx
BugReports https://github.com/lgatto/rpx/issues
Depends On Me proteomics
Imports Me proteoQC
Suggests Me MSnbase, RforProteomics
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rpx_1.21.0.tar.gz
Windows Binary rpx_1.21.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) rpx_1.21.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rpx
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rpx
Package Short Url http://bioconductor.org/packages/rpx/
Package Downloads Report Download Stats

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