rpx

DOI: 10.18129/B9.bioc.rpx    

This is the development version of rpx; for the stable release version, see rpx.

R Interface to the ProteomeXchange Repository

Bioconductor version: Development (3.16)

The rpx package implements an interface to proteomics data submitted to the ProteomeXchange consortium.

Author: Laurent Gatto

Maintainer: Laurent Gatto <laurent.gatto at uclouvain.be>

Citation (from within R, enter citation("rpx")):

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("rpx")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews DataImport, ImmunoOncology, MassSpectrometry, Proteomics, Software, ThirdPartyClient
Version 2.5.0
In Bioconductor since BioC 2.14 (R-3.1) (8 years)
License GPL-2
Depends methods
Imports BiocFileCache, jsonlite, xml2, RCurl, curl, utils
LinkingTo
Suggests Biostrings, BiocStyle, testthat, knitr, rmarkdown
SystemRequirements
Enhances
URL https://github.com/lgatto/rpx
BugReports https://github.com/lgatto/rpx/issues
Depends On Me
Imports Me
Suggests Me MSnbase, PSMatch, RforProteomics
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary rpx_2.5.0.zip
macOS 10.13 (High Sierra) rpx_2.5.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/rpx
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rpx
Package Short Url https://bioconductor.org/packages/rpx/
Package Downloads Report Download Stats

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