reglScatterplotR
This is the development version of reglScatterplotR; to use it, please install the devel version of Bioconductor.
Interactive WebGL Scatterplots for Biological Data Exploration
Bioconductor version: Development (3.24)
Lightweight 'htmlwidgets' interface to the JavaScript 'regl-scatterplot' library, rendering millions of two-dimensional points in the browser via WebGL. Designed for exploratory visualisation of single-cell, spatial transcriptomics and other high-dimensional biological data. Features include synchronised pan/zoom across multiple plots, categorical and continuous colour mapping, lasso selection, range and category filtering, PNG/SVG/PDF export, and Shiny integration. The widget works in the 'RStudio' Viewer, standalone HTML files, Shiny applications and Jupyter notebooks running the 'IRkernel'.
Author: George Muñoz [aut, cre] 
Maintainer: George Muñoz <george.munoz at unmsm.edu.pe>
citation("reglScatterplotR")):George Muñoz. reglScatterplotR: Interactive WebGL Scatterplots for Biological Data Exploration. doi:10.18129/B9.bioc.reglScatterplotR, R package version 0.99.6, https://bioconductor.org/packages/reglScatterplotR.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("reglScatterplotR")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("reglScatterplotR")| Scaling reglScatterplot to millions of points | HTML | R Script |
| Interactive WebGL Scatterplots with reglScatterplot | HTML | R Script |
| Reference Manual |
Details
| biocViews | DimensionReduction, GeneExpression, ShinyApps, SingleCell, Software, Spatial, Transcriptomics, Visualization |
| Version | 0.99.6 |
| In Bioconductor since | BioC 3.24 (R-4.6) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.5.0) |
| Imports | SingleCellExperiment, SummarizedExperiment, htmlwidgets, jsonlite, viridisLite, RColorBrewer, grDevices, methods, stats, shiny |
| System Requirements | |
| URL | https://github.com/george123ya/reglScatterplotR |
| Bug Reports | https://github.com/george123ya/reglScatterplotR/issues |
See More
| Suggests | testthat (>= 3.0.0), knitr, rmarkdown, markdown, BiocStyle, SpatialExperiment, SeuratObject, anndataR, crosstalk, DT |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | reglScatterplotR_0.99.6.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | reglScatterplotR_0.99.6.tgz |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/reglScatterplotR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/reglScatterplotR |
| Package Short Url | https://bioconductor.org/packages/reglScatterplotR/ |
| Package Downloads Report | Download Stats |