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rain

This is the development version of rain; for the stable release version, see rain.

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3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0

Rhythmicity Analysis Incorporating Non-parametric Methods

DOI: 10.18129/B9.bioc.rain

Bioconductor version: Development (3.24)

This package uses non-parametric methods to detect rhythms in time series. It deals with outliers, missing values and is optimized for time series comprising 10-100 measurements. As it does not assume expect any distinct waveform it is optimal or detecting oscillating behavior (e.g. circadian or cell cycle) in e.g. genome- or proteome-wide biological measurements such as: micro arrays, proteome mass spectrometry, or metabolome measurements.

Author: Paul F. Thaben, Pål O. Westermark

Maintainer: Paul F. Thaben <paul.thaben at charite.de>

Citation (from within R, enter citation("rain")):

Paul F. Thaben, Pål O. Westermark. rain: Rhythmicity Analysis Incorporating Non-parametric Methods. doi:10.18129/B9.bioc.rain, R package version 1.47.0, https://bioconductor.org/packages/rain.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("rain")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rain")

Details

Package Archives

Follow Installation instructions to use this package in your R session.