rSWeeP

This is the development version of rSWeeP; for the stable release version, see rSWeeP.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11

Spaced Words Projection (SWeeP)

Bioconductor version: Development (3.24)

"Spaced Words Projection (SWeeP)" is a method for representing biological sequences using vectors preserving inter-sequence comparability.

Author: Camila Pereira Perico [com, cre, aut, cph] ORCID: 0000-0003-0186-4022 , Danrley Rafael Fernandes [aut], Mariane Gonçalves Kulik [aut] ORCID: 0009-0000-5432-3524 , Júlia Formighieri Varaschin [aut], Camilla Reginatto de Pierri [aut] ORCID: 0000-0002-6114-1734 , Ricardo Assunção Vialle [aut] ORCID: 0000-0003-3311-4197 , Roberto Tadeu Raittz [aut, cph] ORCID: 0000-0002-5271-991X

Maintainer: Camila P Perico <camilapp94 at gmail.com>

Citation (from within R, enter citation("rSWeeP")):

Camila Pereira Perico, Danrley Rafael Fernandes, Mariane Gonçalves Kulik, Júlia Formighieri Varaschin, Camilla Reginatto de Pierri, Ricardo Assunção Vialle, Roberto Tadeu Raittz. rSWeeP: Spaced Words Projection (SWeeP). doi:10.18129/B9.bioc.rSWeeP, R package version 1.25.0, https://bioconductor.org/packages/rSWeeP.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("rSWeeP")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("rSWeeP")

rSWeeP	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Software
Version	1.25.0
In Bioconductor since	BioC 3.11 (R-4.0) (6.5 years)
License	GPL (>= 2)
Depends	foreach, doParallel, parallel, Biostrings, methods, utils
Imports	tools, stringi
System Requirements
URL

Suggests	Rtsne, ape, Seurat, knitr, rmarkdown, tictoc, BiocStyle, testthat (>= 3.0.0)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	rSWeeP_1.25.0.tar.gz
Windows Binary (x86_64)	rSWeeP_1.25.0.zip (64-bit only)
macOS Binary (big-sur-x86_64)	rSWeeP_1.25.0.tgz
macOS Binary (sonoma-arm64)	rSWeeP_1.25.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/rSWeeP
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/rSWeeP
Package Short Url	https://bioconductor.org/packages/rSWeeP/
Package Downloads Report	Download Stats