rBiopaxParser

DOI: 10.18129/B9.bioc.rBiopaxParser    

This is the development version of rBiopaxParser; for the stable release version, see rBiopaxParser.

Parses BioPax files and represents them in R

Bioconductor version: Development (3.12)

Parses BioPAX files and represents them in R, at the moment BioPAX level 2 and level 3 are supported.

Author: Frank Kramer

Maintainer: Frank Kramer <dev at frankkramer.de>

Citation (from within R, enter citation("rBiopaxParser")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("rBiopaxParser")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews DataRepresentation, Software
Version 2.29.0
In Bioconductor since BioC 2.12 (R-3.0) (7.5 years)
License GPL (>= 2)
Depends R (>= 3.0.0), data.table
Imports XML
LinkingTo
Suggests Rgraphviz, RCurl, graph, RUnit, BiocGenerics, nem, RBGL, igraph
SystemRequirements
Enhances
URL https://github.com/frankkramer-lab/rBiopaxParser
Depends On Me
Imports Me AnnotationHubData, pwOmics
Suggests Me AnnotationHub, NetPathMiner
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/rBiopaxParser
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rBiopaxParser
Package Short Url https://bioconductor.org/packages/rBiopaxParser/
Package Downloads Report Download Stats

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