DOI: 10.18129/B9.bioc.rBiopaxParser  

This is the development version of rBiopaxParser; for the stable release version, see rBiopaxParser.

Parses BioPax files and represents them in R

Bioconductor version: Development (3.19)

Parses BioPAX files and represents them in R, at the moment BioPAX level 2 and level 3 are supported.

Author: Frank Kramer

Maintainer: Frank Kramer <frank.kramer at informatik.uni-augsburg.de>

Citation (from within R, enter citation("rBiopaxParser")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script rBiopaxParser Vignette
PDF   Reference Manual
Text   NEWS


biocViews DataRepresentation, Software
Version 2.43.0
In Bioconductor since BioC 2.12 (R-3.0) (10.5 years)
License GPL (>= 2)
Depends R (>= 4.0), data.table
Imports XML
Suggests Rgraphviz, RCurl, graph, RUnit, BiocGenerics, RBGL, igraph
URL https://github.com/frankkramer-lab/rBiopaxParser
Depends On Me
Imports Me pwOmics
Suggests Me AnnotationHub, NetPathMiner
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package rBiopaxParser_2.43.0.tar.gz
Windows Binary rBiopaxParser_2.43.0.zip
macOS Binary (x86_64) rBiopaxParser_2.43.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/rBiopaxParser
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/rBiopaxParser
Bioc Package Browser https://code.bioconductor.org/browse/rBiopaxParser/
Package Short Url https://bioconductor.org/packages/rBiopaxParser/
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