plyinteractions
This is the development version of plyinteractions; for the stable release version, see plyinteractions.
Extending tidy verbs to genomic interactions
Bioconductor version: Development (3.24)
Operate on `GInteractions` objects as tabular data using `dplyr`-like verbs. The functions and methods in `plyinteractions` provide a grammatical approach to manipulate `GInteractions`, to facilitate their integration in genomic analysis workflows.
Author: Jacques Serizay [aut, cre]
Maintainer: Jacques Serizay <jacquesserizay at gmail.com>
citation("plyinteractions")):Jacques Serizay. plyinteractions: Extending tidy verbs to genomic interactions. doi:10.18129/B9.bioc.plyinteractions, R package version 1.11.1, https://bioconductor.org/packages/plyinteractions.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("plyinteractions")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("plyinteractions")| plyinteractions | HTML | R Script |
| HiCarithmetic | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Infrastructure, Software |
| Version | 1.11.1 |
| In Bioconductor since | BioC 3.18 (R-4.3) (3 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.3.0), InteractionSet, plyranges (>= 1.31.5) |
| Imports | Seqinfo, BiocGenerics, GenomicRanges, IRanges, S4Vectors, rlang, dplyr, tibble, tidyselect, methods, utils |
| System Requirements | |
| URL | https://github.com/js2264/plyinteractions |
| Bug Reports | https://github.com/js2264/plyinteractions/issues |
See More
| Suggests | tidyverse, BSgenome.Mmusculus.UCSC.mm10, Biostrings, BiocParallel, GenomeInfoDb, scales, HiContactsData, rtracklayer, BiocStyle, covr, knitr, rmarkdown, sessioninfo, testthat (>= 3.0.0), RefManageR |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | GenomicCoordinates, OHCA |
| Suggests Me | tidyomics |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | plyinteractions_1.11.1.tar.gz |
| Windows Binary (x86_64) | plyinteractions_1.11.1.zip |
| macOS Binary (big-sur-x86_64) | plyinteractions_1.11.1.tgz |
| macOS Binary (sonoma-arm64) | plyinteractions_1.11.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/plyinteractions |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/plyinteractions |
| Package Short Url | https://bioconductor.org/packages/plyinteractions/ |
| Package Downloads Report | Download Stats |