plier

This is the development version of plier; for the stable release version, see plier.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

Implements the Affymetrix PLIER algorithm

Bioconductor version: Development (3.24)

The PLIER (Probe Logarithmic Error Intensity Estimate) method produces an improved signal by accounting for experimentally observed patterns in probe behavior and handling error at the appropriately at low and high signal values.

Author: Affymetrix Inc., Crispin J Miller, PICR

Maintainer: Crispin Miller <cmiller at picr.man.ac.uk>

Citation (from within R, enter citation("plier")):

Affymetrix Inc., Crispin J Miller, PICR. plier: Implements the Affymetrix PLIER algorithm. doi:10.18129/B9.bioc.plier, R package version 1.83.0, https://bioconductor.org/packages/plier.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("plier")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference Manual	PDF
README	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Software
Version	1.83.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 21.5 years)
License	GPL (>= 2)
Depends	R (>= 2.0), methods
Imports	affy, Biobase, methods
System Requirements
URL

Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	piano
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	plier_1.83.0.tar.gz
Windows Binary (x86_64)	plier_1.83.0.zip
macOS Binary (big-sur-x86_64)	plier_1.83.0.tgz
macOS Binary (sonoma-arm64)	plier_1.83.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/plier
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/plier
Package Short Url	https://bioconductor.org/packages/plier/
Package Downloads Report	Download Stats