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pepXMLTab

This is the development version of pepXMLTab; for the stable release version, see pepXMLTab.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0

Parsing pepXML files and filter based on peptide FDR.

DOI: 10.18129/B9.bioc.pepXMLTab

Bioconductor version: Development (3.24)

Parsing pepXML files based one XML package. The package tries to handle pepXML files generated from different softwares. The output will be a peptide-spectrum-matching tabular file. The package also provide function to filter the PSMs based on FDR.

Author: Xiaojing Wang

Maintainer: Xiaojing Wang <xiaojing.wang at vanderbilt.edu>

Citation (from within R, enter citation("pepXMLTab")):

Xiaojing Wang. pepXMLTab: Parsing pepXML files and filter based on peptide FDR. doi:10.18129/B9.bioc.pepXMLTab, R package version 1.47.0, https://bioconductor.org/packages/pepXMLTab.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("pepXMLTab")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pepXMLTab")

Details

Package Archives

Follow Installation instructions to use this package in your R session.