pdInfoBuilder

This is the development version of pdInfoBuilder; for the stable release version, see pdInfoBuilder.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

Platform Design Information Package Builder

Bioconductor version: Development (3.24)

Builds platform design information packages. These consist of a SQLite database containing feature-level data such as x, y position on chip and featureSet ID. The database also incorporates featureSet-level annotation data. The products of this packages are used by the oligo pkg.

Author: Seth Falcon, Vince Carey, Matt Settles, Kristof de Beuf, Benilton Carvalho

Maintainer: Benilton Carvalho <benilton at unicamp.br>

Citation (from within R, enter citation("pdInfoBuilder")):

Seth Falcon, Vince Carey, Matt Settles, Kristof de Beuf, Benilton Carvalho. pdInfoBuilder: Platform Design Information Package Builder. doi:10.18129/B9.bioc.pdInfoBuilder, R package version 1.77.0, https://bioconductor.org/packages/pdInfoBuilder.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("pdInfoBuilder")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pdInfoBuilder")

Building Annotation Packages with pdInfoBuilder for Use with the oligo Package	PDF
PDInfo Package Building Affymetrix Mapping Chips	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Annotation, Infrastructure, Software
Version	1.77.0
In Bioconductor since	BioC 2.0 (R-2.5) (19.5 years)
License	Artistic-2.0
Depends	R (>= 3.2.0), methods, Biobase (>= 2.27.3), RSQLite (>= 1.0.0), affxparser (>= 1.39.4), oligo (>= 1.31.5)
Imports	Biostrings (>= 2.35.12), BiocGenerics (>= 0.13.11), DBI (>= 0.3.1), IRanges (>= 2.1.43), oligoClasses (>= 1.29.6), S4Vectors (>= 0.5.22)
System Requirements
URL

Suggests
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	aroma.affymetrix, maGUI, maqcExpression4plex
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	pdInfoBuilder_1.77.0.tar.gz
Windows Binary (x86_64)	pdInfoBuilder_1.77.0.zip
macOS Binary (big-sur-x86_64)	pdInfoBuilder_1.77.0.tgz
macOS Binary (sonoma-arm64)	pdInfoBuilder_1.77.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/pdInfoBuilder
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/pdInfoBuilder
Package Short Url	https://bioconductor.org/packages/pdInfoBuilder/
Package Downloads Report	Download Stats