omicsPrint
This is the development version of omicsPrint; for the stable release version, see omicsPrint.
Cross omic genetic fingerprinting
Bioconductor version: Development (3.20)
omicsPrint provides functionality for cross omic genetic fingerprinting, for example, to verify sample relationships between multiple omics data types, i.e. genomic, transcriptomic and epigenetic (DNA methylation).
Author: Maarten van Iterson [aut], Davy Cats [cre]
Maintainer: Davy Cats <davycats.dc at gmail.com>
citation("omicsPrint")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("omicsPrint")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("omicsPrint")
omicsPrint: detection of data linkage errors in multiple omics studies | HTML | R Script |
Reference Manual | ||
NEWS | Text |
Details
biocViews | DNAMethylation, Epigenetics, GeneticVariability, Genetics, ImmunoOncology, QualityControl, Software, Transcription, Transcriptomics |
Version | 1.25.0 |
In Bioconductor since | BioC 3.7 (R-3.5) (6.5 years) |
License | GPL (>= 2) |
Depends | R (>= 3.5), MASS |
Imports | methods, matrixStats, graphics, stats, SummarizedExperiment, MultiAssayExperiment, RaggedExperiment |
System Requirements | |
URL |
See More
Suggests | BiocStyle, knitr, rmarkdown, testthat, GEOquery, VariantAnnotation, Rsamtools, BiocParallel, GenomicRanges, FDb.InfiniumMethylation.hg19, snpStats |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | omicsPrint_1.25.0.tar.gz |
Windows Binary | omicsPrint_1.25.0.zip |
macOS Binary (x86_64) | omicsPrint_1.25.0.tgz |
macOS Binary (arm64) | omicsPrint_1.25.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/omicsPrint |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/omicsPrint |
Bioc Package Browser | https://code.bioconductor.org/browse/omicsPrint/ |
Package Short Url | https://bioconductor.org/packages/omicsPrint/ |
Package Downloads Report | Download Stats |