omicsPrint

This is the development version of omicsPrint; for the stable release version, see omicsPrint.

Cross omic genetic fingerprinting


Bioconductor version: Development (3.20)

omicsPrint provides functionality for cross omic genetic fingerprinting, for example, to verify sample relationships between multiple omics data types, i.e. genomic, transcriptomic and epigenetic (DNA methylation).

Author: Maarten van Iterson [aut], Davy Cats [cre]

Maintainer: Davy Cats <davycats.dc at gmail.com>

Citation (from within R, enter citation("omicsPrint")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("omicsPrint")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("omicsPrint")
omicsPrint: detection of data linkage errors in multiple omics studies HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews DNAMethylation, Epigenetics, GeneticVariability, Genetics, ImmunoOncology, QualityControl, Software, Transcription, Transcriptomics
Version 1.25.0
In Bioconductor since BioC 3.7 (R-3.5) (6.5 years)
License GPL (>= 2)
Depends R (>= 3.5), MASS
Imports methods, matrixStats, graphics, stats, SummarizedExperiment, MultiAssayExperiment, RaggedExperiment
System Requirements
URL
See More
Suggests BiocStyle, knitr, rmarkdown, testthat, GEOquery, VariantAnnotation, Rsamtools, BiocParallel, GenomicRanges, FDb.InfiniumMethylation.hg19, snpStats
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package omicsPrint_1.25.0.tar.gz
Windows Binary omicsPrint_1.25.0.zip
macOS Binary (x86_64) omicsPrint_1.25.0.tgz
macOS Binary (arm64) omicsPrint_1.25.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/omicsPrint
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/omicsPrint
Bioc Package Browser https://code.bioconductor.org/browse/omicsPrint/
Package Short Url https://bioconductor.org/packages/omicsPrint/
Package Downloads Report Download Stats