• Home
• Bioconductor 3.24
• Software Packages
• odseq (development version)

odseq

This is the development version of odseq; for the stable release version, see odseq.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3

Outlier detection in multiple sequence alignments

DOI: 10.18129/B9.bioc.odseq

Bioconductor version: Development (3.24)

Performs outlier detection of sequences in a multiple sequence alignment using bootstrap of predefined distance metrics. Outlier sequences can make downstream analyses unreliable or make the alignments less accurate while they are being constructed. This package implements the OD-seq algorithm proposed by Jehl et al (doi 10.1186/s12859-015-0702-1) for aligned sequences and a variant using string kernels for unaligned sequences.

Author: José Jiménez

Maintainer: José Jiménez <jose at jimenezluna.com>

Citation (from within R, enter citation("odseq")):

José Jiménez. odseq: Outlier detection in multiple sequence alignments. doi:10.18129/B9.bioc.odseq, R package version 1.41.0, https://bioconductor.org/packages/odseq.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("odseq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("odseq")

Details

Package Archives

Follow Installation instructions to use this package in your R session.