multiMiR

This is the development version of multiMiR; for the stable release version, see multiMiR.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6

Integration of multiple microRNA-target databases with their disease and drug associations

Bioconductor version: Development (3.24)

A collection of microRNAs/targets from external resources, including validated microRNA-target databases (miRecords, miRTarBase and TarBase), predicted microRNA-target databases (DIANA-microT, ElMMo, MicroCosm, miRanda, miRDB, PicTar, PITA and TargetScan) and microRNA-disease/drug databases (miR2Disease, Pharmaco-miR VerSe and PhenomiR).

Author: Yuanbin Ru [aut], Matt Mulvahill [aut], Spencer Mahaffey [cre, aut], Katerina Kechris [aut, cph, ths]

Maintainer: Spencer Mahaffey <Spencer.Mahaffey at cuanschutz.edu>

Citation (from within R, enter citation("multiMiR")):

Yuanbin Ru, Matt Mulvahill, Spencer Mahaffey, Katerina Kechris. multiMiR: Integration of multiple microRNA-target databases with their disease and drug associations. doi:10.18129/B9.bioc.multiMiR, R package version 1.35.0, https://bioconductor.org/packages/multiMiR.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("multiMiR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("multiMiR")

The multiMiR user's guide	HTML	R Script
Reference Manual	PDF
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Homo_sapiens_Data, Mus_musculus_Data, OrganismData, Rattus_norvegicus_Data, Software, miRNAData
Version	1.35.0
In Bioconductor since	BioC 3.6 (R-3.4) (9 years)
License	MIT + file LICENSE
Depends	R (>= 3.4)
Imports	stats, XML, RCurl, purrr (>= 0.2.2), tibble (>= 2.0), methods, BiocGenerics, AnnotationDbi, dplyr
System Requirements
URL	https://github.com/KechrisLab/multiMiR
Bug Reports	https://github.com/KechrisLab/multiMiR/issues

Suggests	BiocStyle, edgeR, knitr, rmarkdown, testthat (>= 1.0.2)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	EpiMix
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	multiMiR_1.35.0.tar.gz
Windows Binary (x86_64)	multiMiR_1.35.0.zip
macOS Binary (big-sur-x86_64)	multiMiR_1.35.0.tgz
macOS Binary (sonoma-arm64)	multiMiR_1.35.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/multiMiR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/multiMiR
Package Short Url	https://bioconductor.org/packages/multiMiR/
Package Downloads Report	Download Stats