moanin

DOI: 10.18129/B9.bioc.moanin    

This is the development version of moanin; for the stable release version, see moanin.

An R Package for Time Course RNASeq Data Analysis

Bioconductor version: Development (3.15)

Simple and efficient workflow for time-course gene expression data, built on publictly available open-source projects hosted on CRAN and bioconductor. moanin provides helper functions for all the steps required for analysing time-course data using functional data analysis: (1) functional modeling of the timecourse data; (2) differential expression analysis; (3) clustering; (4) downstream analysis.

Author: Elizabeth Purdom [aut] , Nelle Varoquaux [aut, cre]

Maintainer: Nelle Varoquaux <nelle.varoquaux at gmail.com>

Citation (from within R, enter citation("moanin")):

Installation

To install this package, start R (version "4.2") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("moanin")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("moanin")

 

HTML R Script The Moanin Package
PDF   Reference Manual
Text   README
Text   LICENSE

Details

biocViews Clustering, DifferentialExpression, GeneExpression, Microarray, RNASeq, Software, TimeCourse
Version 1.3.0
In Bioconductor since BioC 3.13 (R-4.1) (0.5 years)
License BSD 3-clause License + file LICENSE
Depends R (>= 4.0), SummarizedExperiment, topGO, stats
Imports S4Vectors, MASS (>= 1.0.0), limma, viridis, edgeR, graphics, methods, grDevices, reshape2, NMI, zoo, ClusterR, splines, matrixStats
LinkingTo
Suggests testthat (>= 1.0.0), timecoursedata, knitr, rmarkdown, markdown, covr, BiocStyle
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package moanin_1.3.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra) moanin_1.3.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/moanin
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/moanin
Package Short Url https://bioconductor.org/packages/moanin/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: