mirIntegrator

This is the development version of mirIntegrator; for the stable release version, see mirIntegrator.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2

Integrating microRNA expression into signaling pathways for pathway analysis

Bioconductor version: Development (3.24)

Tools for augmenting signaling pathways to perform pathway analysis of microRNA and mRNA expression levels.

Author: Diana Diaz <dmd at wayne dot edu>

Maintainer: Diana Diaz <dmd at wayne.edu>

Citation (from within R, enter citation("mirIntegrator")):

Diana Diaz. mirIntegrator: Integrating microRNA expression into signaling pathways for pathway analysis. doi:10.18129/B9.bioc.mirIntegrator, R package version 1.43.0, https://bioconductor.org/packages/mirIntegrator.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("mirIntegrator")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mirIntegrator")

mirIntegrator Overview	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	GraphAndNetwork, KEGG, Microarray, Network, Pathways, Software
Version	1.43.0
In Bioconductor since	BioC 3.2 (R-3.2) (11 years)
License	GPL (>=3)
Depends	R (>= 3.3)
Imports	graph, ROntoTools, ggplot2, org.Hs.eg.db, AnnotationDbi, Rgraphviz
System Requirements
URL	http://datad.github.io/mirIntegrator/

Suggests	RUnit, BiocGenerics
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	mirIntegrator_1.43.0.tar.gz
Windows Binary (x86_64)	mirIntegrator_1.43.0.zip
macOS Binary (big-sur-x86_64)	mirIntegrator_1.43.0.tgz
macOS Binary (sonoma-arm64)	mirIntegrator_1.43.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/mirIntegrator
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/mirIntegrator
Package Short Url	https://bioconductor.org/packages/mirIntegrator/
Package Downloads Report	Download Stats