microbiome

DOI: 10.18129/B9.bioc.microbiome    

This is the development version of microbiome; for the stable release version, see microbiome.

Microbiome Analytics

Bioconductor version: Development (3.9)

Utilities for microbiome analysis.

Author: Leo Lahti [aut, cre], Sudarshan Shetty [aut]

Maintainer: Leo Lahti <leo.lahti at iki.fi>

Citation (from within R, enter citation("microbiome")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("microbiome", version = "3.9")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("microbiome")

 

HTML R Script microbiome R package
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews Clustering, ImmunoOncology, Metagenomics, Microbiome, Sequencing, Software, SystemsBiology
Version 1.5.2
License BSD_2_clause + file LICENSE
Depends R (>= 3.5.0), phyloseq, ggplot2
Imports dplyr, reshape2, Rtsne, scales, stats, tidyr, utils, vegan
LinkingTo
Suggests BiocGenerics, BiocStyle, Cairo, knitcitations, knitr, rmarkdown, testthat
SystemRequirements
Enhances
URL http://microbiome.github.io/microbiome
BugReports https://github.com/microbiome/microbiome/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package microbiome_1.5.2.tar.gz
Windows Binary microbiome_1.5.2.zip
Mac OS X 10.11 (El Capitan) microbiome_1.5.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/microbiome
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/microbiome
Package Short Url http://bioconductor.org/packages/microbiome/
Package Downloads Report Download Stats

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