miRLAB

This is the development version of miRLAB; for the stable release version, see miRLAB.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2

Dry lab for exploring miRNA-mRNA relationships

Bioconductor version: Development (3.24)

Provide tools exploring miRNA-mRNA relationships, including popular miRNA target prediction methods, ensemble methods that integrate individual methods, functions to get data from online resources, functions to validate the results, and functions to conduct enrichment analyses.

Author: Thuc Duy Le, Junpeng Zhang, Mo Chen, Vu Viet Hoang Pham

Maintainer: Thuc Duy Le <Thuc.Le at unisa.edu.au>

Citation (from within R, enter citation("miRLAB")):

Thuc Duy Le, Junpeng Zhang, Mo Chen, Vu Viet Hoang Pham. miRLAB: Dry lab for exploring miRNA-mRNA relationships. doi:10.18129/B9.bioc.miRLAB, R package version 1.43.0, https://bioconductor.org/packages/miRLAB.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("miRLAB")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("miRLAB")

miRLAB	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	GeneExpression, Network, NetworkInference, Software, miRNA
Version	1.43.0
In Bioconductor since	BioC 3.2 (R-3.2) (11 years)
License	GPL (>=2)
Depends
Imports	methods, stats, utils, RCurl, httr, stringr, Hmisc, energy, entropy, gplots, glmnet, impute, limma, pcalg, TCGAbiolinks, dplyr, SummarizedExperiment, ctc, InvariantCausalPrediction, Category, GOstats, org.Hs.eg.db
System Requirements
URL	https://github.com/pvvhoang/miRLAB

Suggests	knitr, BiocGenerics, AnnotationDbi, RUnit, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	miRLAB_1.43.0.tar.gz
Windows Binary (x86_64)	miRLAB_1.43.0.zip
macOS Binary (big-sur-x86_64)	miRLAB_1.43.0.tgz
macOS Binary (sonoma-arm64)	miRLAB_1.43.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/miRLAB
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/miRLAB
Package Short Url	https://bioconductor.org/packages/miRLAB/
Package Downloads Report	Download Stats