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miRBaseConverter

This is the development version of miRBaseConverter; for the stable release version, see miRBaseConverter.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6

A comprehensive and high-efficiency tool for converting and retrieving the information of miRNAs in different miRBase versions


Bioconductor version: Development (3.24)

A comprehensive tool for converting and retrieving the miRNA Name, Accession, Sequence, Version, History and Family information in different miRBase versions. It can process a huge number of miRNAs in a short time without other depends.

Author: Taosheng Xu Taosheng Xu [aut, cre] ORCID iD ORCID: 0000-0001-8283-7274

Maintainer: Taosheng Xu Taosheng Xu <taosheng.x at gmail.com>

Citation (from within R, enter citation("miRBaseConverter")):

Taosheng Xu Taosheng Xu. miRBaseConverter: A comprehensive and high-efficiency tool for converting and retrieving the information of miRNAs in different miRBase versions. doi:10.18129/B9.bioc.miRBaseConverter, R package version 1.37.0, https://bioconductor.org/packages/miRBaseConverter.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("miRBaseConverter")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("miRBaseConverter")
"miRBaseConverter: A comprehensive and high-efficiency tool for converting and retrieving the information of miRNAs in different miRBase versions" HTML R Script
Reference ManualPDF
NEWSText

Details

biocViews Software, miRNA
Version1.37.0
In Bioconductor sinceBioC 3.6 (R-3.4) (9 years)
License GPL (>= 2)
Depends R (>= 3.4)
Imports stats
System Requirements
URLhttps://github.com/taoshengxu/miRBaseConverter
Bug Reportshttps://github.com/taoshengxu/miRBaseConverter/issues
See More
Suggests BiocGenerics, RUnit, knitr, rtracklayer, utils, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me EpiMix
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package miRBaseConverter_1.37.0.tar.gz
Windows Binary (x86_64) miRBaseConverter_1.37.0.zip
macOS Binary (big-sur-x86_64) miRBaseConverter_1.37.0.tgz
macOS Binary (sonoma-arm64) miRBaseConverter_1.37.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/miRBaseConverter
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/miRBaseConverter
Package Short Url https://bioconductor.org/packages/miRBaseConverter/
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