metapod
Meta-Analyses on P-Values of Differential Analyses
Bioconductor version: 3.24 · Package version: 1.21.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Implements a variety of methods for combining p-values in differential analyses of genome-scale datasets. Functions can combine p-values across different tests in the same analysis (e.g., genomic windows in ChIP-seq, exons in RNA-seq) or for corresponding tests across separate analyses (e.g., replicated comparisons, effect of different treatment conditions). Support is provided for handling log-transformed input p-values, missing values and weighting where appropriate.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("metapod")Details
| Maintainer | Aaron Lun <infinite.monkeys.with.keyboards@gmail.com> |
| Author | Aaron Lun [aut, cre] |
| License | GPL-3 |
| URL | https://github.com/LTLA/metapod |
| Bug Reports | https://github.com/LTLA/metapod/issues |
| System Requirements | C++11 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | DifferentialPeakCalling, MultipleComparison, Software |
| Package Short Url | https://bioconductor.org/packages/metapod/ |
Citation
From within R, enter citation("metapod"):
Aaron Lun. metapod: Meta-Analyses on P-Values of Differential Analyses. doi:10.18129/B9.bioc.metapod, R package version 1.21.0, https://bioconductor.org/packages/metapod.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | metapod_1.21.0.tar.gz |
| Windows binary (x86_64) | metapod_1.21.0.zip |
| macOS binary (arm64) | metapod_1.21.0.tgz |
| macOS binary (x86_64) | metapod_1.21.0.tgz |
Reverse dependencies
Imports Me (8): augere.screen, BiocDuckDB, csaw, DGEAR, epiregulon, mumosa, scp, scran
Suggests Me (1): TSCAN