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metaMS

This is the development version of metaMS; for the stable release version, see metaMS.

MS-based metabolomics annotation pipeline


Bioconductor version: Development (3.19)

MS-based metabolomics data processing and compound annotation pipeline.

Author: Ron Wehrens [aut] (author of GC-MS part, Initial Maintainer), Pietro Franceschi [aut] (author of LC-MS part), Nir Shahaf [ctb], Matthias Scholz [ctb], Georg Weingart [ctb] (development of GC-MS approach), Elisabete Carvalho [ctb] (testing and feedback of GC-MS pipeline), Yann Guitton [ctb, cre] , Julien Saint-Vanne [ctb]

Maintainer: Yann Guitton <yann.guitton at gmail.com>

Citation (from within R, enter citation("metaMS")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("metaMS")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("metaMS")
runGC PDF R Script
runLC PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews ImmunoOncology, MassSpectrometry, Metabolomics, Software
Version 1.39.0
In Bioconductor since BioC 2.14 (R-3.1) (10 years)
License GPL (>= 2)
Depends R (>= 4.0), methods, CAMERA, xcms(>= 1.35)
Imports Matrix, tools, robustbase, BiocGenerics, graphics, stats, utils
System Requirements
URL https://github.com/yguitton/metaMS
See More
Suggests metaMSdata, RUnit
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me CluMSID
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package metaMS_1.39.0.tar.gz
Windows Binary metaMS_1.39.0.zip
macOS Binary (x86_64) metaMS_1.39.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/metaMS
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/metaMS
Bioc Package Browser https://code.bioconductor.org/browse/metaMS/
Package Short Url https://bioconductor.org/packages/metaMS/
Package Downloads Report Download Stats