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mdqc

This is the development version of mdqc; for the stable release version, see mdqc.

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Mahalanobis Distance Quality Control for microarrays

DOI: 10.18129/B9.bioc.mdqc

Bioconductor version: Development (3.24)

MDQC is a multivariate quality assessment method for microarrays based on quality control (QC) reports. The Mahalanobis distance of an array's quality attributes is used to measure the similarity of the quality of that array against the quality of the other arrays. Then, arrays with unusually high distances can be flagged as potentially low-quality.

Author: Justin Harrington

Maintainer: Gabriela Cohen-Freue <gcohen at mrl.ubc.ca>

Citation (from within R, enter citation("mdqc")):

Justin Harrington. mdqc: Mahalanobis Distance Quality Control for microarrays. doi:10.18129/B9.bioc.mdqc, R package version 1.75.0, https://bioconductor.org/packages/mdqc.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("mdqc")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("mdqc")

Details

Package Archives

Follow Installation instructions to use this package in your R session.